bioclip
Image classifier
A deep learning framework trained on a large biological image dataset to learn taxonomic labels and classify images.
This is the repository for the BioCLIP model and the TreeOfLife-10M dataset [CVPR'24 Oral, Best Student Paper].
174 stars
14 watching
14 forks
Language: Python
last commit: 3 months ago
Linked from 1 awesome list
clipcomputer-visionimageomicsknowledge-guided-machine-learningtaxonomy
protontypes/open-sustainable-technologyRelated projects:
| Repository | Description | Stars |
|---|---|---|
 ibm/max-inception-resnet-v2 | An image classification model using a third-generation deep residual network. | 27 |
 cbib/dypfish | A Python library for statistical analysis of mRNA and protein distributions in single cell confocal images | 2 |
 4dnucleome/partseg | A tool for segmenting biological images | 30 |
 neuralix/google_evolution | A Python implementation of an exotic image classifier architecture inspired by Google's evolution of image classifiers | 53 |
 zhangxiaoyu11/omivae | This project provides an end-to-end deep learning model for low dimensional latent space extraction and multi-class classification on multi-omics datasets. | 31 |
 djcp/linnaeus | A Redis-backed system for classifying documents into categories based on their content. | 38 |
 felixgwu/img_classification_pk_pytorch | A PyTorch project for comparing image classification models and facilitating quick experiment setup | 366 |
 bmirds/deepslide | Classifies high-resolution microscopy images of lung adenocarcinoma using deep neural networks with a sliding window framework. | 494 |
| ibm/max-resnet-50 | An image classification model using the ResNet-50 architecture, trained on the ImageNet dataset. | 14 |
 brainglobe/cellfinder | Automated 3D cell detection tool for large images in microscopy and neuroscience research | 181 |
 tiledb-inc/tiledb-bioimaging | A Python package for efficiently storing and querying biomedical imaging data in TileDB arrays. | 18 |
 cmsflash/beauty-net | Provides a basic framework for training deep learning models on image classification tasks using PyTorch | 187 |
| ibm/max-image-segmenter | An image segmentation system that identifies objects in an image and assigns each pixel to a particular object. | 32 |
 ethanhe42/u-net | A convolutional neural network architecture for biomedical image segmentation | 430 |
 gwgundersen/dpcca | Develops a method to learn shared latent structure between biomedical images and gene expression data | 25 |