typedb-bio

Biomedical database platform

An open-source biomedical knowledge graph platform providing an intuitive way to query interconnected and heterogeneous biological data

TypeDB Bio: Biomedical Knowledge Graph

GitHub

79 stars
10 watching
32 forks
Language: Python
last commit: over 2 years ago
Linked from 1 awesome list

bioinformaticsbiomedicaldrug-discoveryknowledge-baseknowledge-discoveryknowledge-graph

Backlinks from these awesome lists:

Related projects:

RepositoryDescriptionStars
humans-of-julia/typedbclient.jlA client interface to interact with the TypeDB Knowledge Graph database using Julia programming language.51
typedb/typedb-studioAn integrated development environment (IDE) for managing and developing graph databases with a type system.198
typedb-osi/typedb-ctiA platform for storing and managing cyber threat intelligence data, enabling logical inference and connections between disparate pieces of information.146
bioruby/biorubyA Ruby library for developing bioinformatics software.378
typedb/typedb-driverProvides libraries and drivers to interact with the TypeDB database engine.39
dmis-lab/biobertProvides pre-trained language representation models for biomedical text mining tasks1,970
chapmanb/bcbbA collection of reusable code for biological analysis and high-throughput sequencing612
typedb/typedb-driver-examplesExamples of how to use TypeDB drivers with various programming languages and data formats to build scalable graph databases84
lancelafontaine/bioinformatics-compbio-toolsA curated list of bioinformatics and computational biology tools for researchers.50
naver/biobert-pretrainedProvides pre-trained weights for a biomedical language representation model672
ncbi-nlp/bluebertPre-trained language models for biomedical natural language processing tasks560
texworld/betterbibA collection of command-line tools to help manage and format bibliographic data.820
typedb-osi/typedb-loaderA Java-based tool that enables data migration from various file formats to TypeDB at scale, focusing on schema design and querying while reducing memory requirements.59
bebop/polyA comprehensive Go package for computational synthetic biology and gene engineering676
neurotechx/moabbA comprehensive benchmarking framework for evaluating brain-computer interface algorithms on EEG datasets714