awesome-rseng

awesome listShellpushed over 4 years ago

A curated list of GitHub organizations that primarily serve open source or academic software projects.

AI summary

Research orgs

A curated list of GitHub organizations focused on research and academic software projects

stars: 32
forks: 8
watching: 8
entries: 32

View on GitHub rseng.github.io/awesome-rseng

What's in the list

32 links in 16 sections, with live GitHub stats.activeno commit in 2y

Astrophysics

LSST
the legacy survey of space and time
LSST Camera Data Handling

Environment

The National Capital Project
: technology for people and nature, see

Genomics

The ENCODE Data Consortium
or "Encode DCC" serving the Encode Data Portal

Geoscience

Pangeo
: A community effort for big data geoscience

Health and Medicine / Epidemiology

MRC Centre for Outbreak Analysis and Modelling
: open source software for the
VIMC
: open source code to support the
Reside IC
: Research Software for the Infectious Disease Epidemiology @ Imperial College

High Performance Computing

CEED
: ECP Co-Design Center for Efficient Exascale Discretizations (CEED)
spack
a flexible package manager for multiple versions, configurations, and compilers
RADIUSS
: Rapid Application Development via an Institutional Universal Software Stack

Academic Groups

Imperial College London

Academic Labs

Nolan Lab
at Stanford University focuses on signaling in the immune system and study of oncogenic process
Poldrack Lab
at Stanford University focuses on standard workflows for processing structural and functional neuroimaging (MRI) data

National Labs

SLAC
National Accelerator Laboratory
LINAC Coherent Light Source
at SLAC for experiments with High Energy Physics, Materials Science, Biologists, etc
ORNL
Oak Ridge National Laboratory
OLCF
Oak Ridge Leadership Computing Facility
BNL
Brookhaven National Laboratory
BNL-SDCC
Brookhaven National Laboratory Scientific Data and Computing Center
NSLS-II
National Synchrotron Light Source II at Brookhaven National Laboratory
BNL-NPP
Brookhaven National Laboratory Nuclear and Particle Physics Software Group
LLNL
Lawrence Livermore National Laboratory (and its )

Materials Science / Neutron Scattering

Mantid Project
Framework for analysis and visualization of neutron scattering and muon spectroscopy data
neutrons
Neutron Scattering Softwares, mainly for

Neuroscience

nipreps
standard workflows for processing a wide variety of neuroimaging (MRI) data
nipy
utilities for working with neuroimaging (MRI) data

Probabilistic Programming

The Turing Language
Bayesian inference with probabilistic programming using the Julia language

Psychology

The Experiment Factory
tools, containers, and web based experiments

Containers

singularityhub
open source tools to support Singularity containers

Workflows

Snakemake
scientific workflow manager written in Python

Training

CarpenPi
Running Carpentries Training on Raspberry Pis