chemical_vae

SMILES encoder

A software framework for constructing and training variational autoencoders for encoding molecular SMILES into compact code vectors.

Code for 10.1021/acscentsci.7b00572, now running on Keras 2.0 and Tensorflow

GitHub

495 stars
36 watching
182 forks
Language: Python
last commit: over 3 years ago
Linked from 1 awesome list


Backlinks from these awesome lists:

Related projects:

RepositoryDescriptionStars
kefirski/pytorch_rvaeA deep learning implementation of a recurrent variational autoencoder for generating sequential data.357
darienhuss/shotgunyaraTools and utilities for generating encoded versions of input data9
gordonhu608/mqt-llavaA vision-language model that uses a query transformer to encode images as visual tokens and allows flexible choice of the number of visual tokens.101
ryankiros/skip-thoughtsProvides an implementation of Skip-Thought Vectors for encoding and analyzing sentence pairs2,050
fh295/sentencerepresentationA software framework for learning sentence representations using unsupervised machine learning algorithms124
dakrone/cheshireFast JSON encoding library with custom encoders and support for SMILE format1,493
aspuru-guzik-group/selfiesA Python library that provides a robust representation of semantically constrained graphs, specifically for molecules in chemistry.696
cdoersch/vae_tutorialAn open-source implementation of Variational Autoencoders and Conditional Variational Autoencoders for image reconstruction tasks503
fducau/aae_pytorchAn implementation of Adversarial Autoencoders using PyTorch for training neural networks on structured data.199
cxhernandez/molencoderA PyTorch-based implementation of an autoencoder for molecular data processing and encoding.88
sija/base62.crA library that encodes numbers using a compact set of characters (Base62) and provides decoding functionality.10
arolek/aseAn ASE file decoder and encoder written in Go12
trungnt13/sisuaA software framework for semi-supervised generative Autoencoder models applied to single-cell data analysis.18
baaivision/eveA PyTorch implementation of an encoder-free vision-language model that can be fine-tuned for various tasks and modalities246
auspicious3000/contentvecAn implementation of a self-supervised speech representation model using PyTorch and disentangled speaker embeddings471